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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs6551461 chr3:90286317 T/A STX19 chr3:93733213-93747454:- -0.42 -6.59 1.18E-10 Box Plot
THCA rs6555951 chr5:170811581 G/C CLEC2D chr12:9817565-9852151:+ -0.19 -6 3.9E-9 Box Plot
THCA rs6555952 chr5:170827115 C/A CLEC2D chr12:9817565-9852151:+ -0.18 -5.92 6.03E-9 Box Plot
THCA rs6555953 chr5:170827118 A/G CLEC2D chr12:9817565-9852151:+ -0.18 -5.92 6.03E-9 Box Plot
THCA rs655623 chr5:176534516 A/G LOC388955 chr2:63849182-63850159:- 0.84 21.42 7.24E-72 Box Plot
THCA rs6556308 chr5:176646701 T/C LOC388955 chr2:63849182-63850159:- -0.69 -17.76 1.45E-54 Box Plot
THCA rs6556309 chr5:176693835 C/T LOC388955 chr2:63849182-63850159:- 0.84 22.4 1.56E-76 Box Plot
THCA rs6558763 chr8:3233082 A/G CSMD1 chr8:2792875-4852494:- -0.35 -6.77 3.86E-11 Box Plot
THCA rs6558765 chr8:3245840 A/G CSMD1 chr8:2792875-4852494:- -0.32 -6.06 2.79E-9 Box Plot
THCA rs6558770 chr8:3296160 C/G CSMD1 chr8:2792875-4852494:- -0.5 -5.94 5.45E-9 Box Plot
THCA rs656319 chr8:9814411 A/G SGK223 chr8:8175258-8244008:- 0.39 7.55 2.23E-13 Box Plot
THCA rs6563219 chr13:82086806 C/G LHX1 chr17:35294084-35301912:+ 0.29 6.43 3.04E-10 Box Plot
THCA rs6563220 chr13:82086821 A/G LHX1 chr17:35294084-35301912:+ 0.29 6.36 4.61E-10 Box Plot
THCA rs6563221 chr13:82086881 T/A LHX1 chr17:35294084-35301912:+ 0.29 6.43 3.04E-10 Box Plot
THCA rs6563222 chr13:82087009 G/T LHX1 chr17:35294084-35301912:+ 0.29 6.43 3.04E-10 Box Plot